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Department of Biochemistry

 
4th EPIC-XS Webinar of Spatial Proteomics

On 26 August 2021, the 4th EPIC-XS Webinar on Spatial Proteomics will take place.

 

The European Proteomics Infrastructure Consortium providing Access (EPIC-XS) consists of a unified network of experienced access providers and research groups who share a common goal: to facilitate the development and sustainability of proteomics exploration to all life science researchers within the European Union. The initiative is coordinated by the Utrecht University.

 

The Webinar will include:

  • Fluorescent imaging (both live and fixed cell),
  • Protein proximity labelling,
  • Organelle purification,
  • Cell-wide biochemical fractionation,
  • Laser capture microdissection,
  • Deep visual proteomics,
  • Computational challenges in spatial proteomics.

 

The previous 2021 Webinars were a great success; so do not miss this event!

For more information, visit the EPIC-XS website and follow EPIC-XS on Twitter.

EPIC-XS has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 823839.

 

Registration

Registration is now open! Click here to register.

 

Programme

Thursday 26 August 2021, 15:45-18:45

(14:45-17:45 BST, 09:45-12:45 EST, 06:45-09:45 PST)

 

Welcome       
15:45-15:55 Participants join
15:55-16:00 Welcome from the Chairs,
Emma Lundberg, Science for Life Laboratory, Stockholm, Sweden, and;
Kathryn Lilley, University of Cambridge, UK

 

Session 1      Subcellular spatial proteomics using mass spectrometry
Chair: Kathryn Lilley
16:00-16:15 Overview of subcellular spatial proteomics,
Bettina Warscheid, University of Freiburg, Germany
16:15-16:30 Proximity tagging approaches to determine subcellular location,
Claire Martin, Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Canada
16:30-16:45 Subcellbarcode – Spatial proteomics using subcellular fraction and PTM enrichment,
Janne Lehtiö, Karolinska Institute, Stockholm, Sweden
16:45-17:00 Computational challenges in subcellular spatial proteomics,
Lisa Breckels, University of Cambridge, UK
17:00-17:15 Q&A with the 4 speakers, moderated by Kathryn Lilley
17:15-17:30 Coffee break

 

Session 2      Imaging based methods
Chair: Emma Lundberg
17:30-17:45 Overview of spatial proteomics methods,
Charlotte Stadler, Science for Life Laboratory, Stockholm, Sweden
17:45-18:00 Deep Visual Proteomics,
Andreas Mund, Novo Nordisk Center for Protein Research, Copenhagen University, Denmark
18:00-18:15 OpenCell: Spatial proteomics and interactomics using FP tagging,
Manu Leonetti, CZ Biohub, CA, USA
18:15-18:30 Computational challenges in imaging based spatial proteomics,
Omer Bar-Tal, Weizmann Institute, Israel
18:30-18:45 Q&A with the 4 speakers, moderated by Emma Lundberg