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Useful Links |
Recent Publications
Nucleotide Design Tools
- Primer3 — PCR Primer design program
- Sigma DNA calculator — Oligonucleotide melting temperature prediction calculator
- Primer Dimer calculator — Oligonucleotide melting temperature and primer dimer prediction calculator, Helsinki university
- Reverse Complementation tool — DNA sequence is converted into reverse complement sequence
- Pseudomonas Genome Database — Annotated PAO1 genome sequence with BLAST search
- E. carotovora Genome Database — Genome sequence
- Translation tool — Convert nucleotide sequence into protein sequence, ExPASy
- Oligonucleotide Ordering Service — Sigma Genosys
- DNA sequencing Service — Biochemistry Department, University of Cambridge
Cloning Tools
- NEB cutter — Identifies restriction enzyme cut sites within DNA sequence
- NEB cut site frequency — Approximate frequency that restriction enzymes cut within PAO1 genome
- BCCM/LMBP plasmids catalogue — Plasmid Maps
- ADDgene plasmid repositary — Plasmid Maps
- NCBI — National Centre for Biotechnology Information including nucleotide, protein and literature databases with BLAST search available
- W2H — Sequence Analysis Software Tools
Metabolomic Analysis
Proteomics Analysis
- MASCOT — Search engine which uses mass spectrometry data to identify proteins from primary sequence databases, Matrix Science
- Swiss-Prot — Protein sequence database, ExPASy
- pI and MW Calculator — Tool to compute the theoretical isoelectric point and molecular weight of a protein the sequence, ExPASy
- Cambridge Centre for Proteomics — Biochemistry Department, University of Cambridge
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Literature Search
- PubMed — NCBI database of journals
- HubMed —Interactive interface for PubMed
- Google Scholar — Search engine for journals
- ISI Web of Knowledge — Provides a single route to all the Thomson Scientific products subscribed to by your institution
- Ejournals — Cambridge University Library online journal subscriptions
Funding
- BBSRC — Biotechnology and Biological Science Research Council
- MRC — Medical Research Council
- The Royal Society — The National academy of Science of the UK and the Commonwealth
- SGM — Society for General Microbiology
- pFACT tool — Project Financial Appraisal and Costing Tool, University of Cambridge
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