Work in the lab is focused on understanding how bacterial populations sense and respond to (i) one another and (ii) specific environmental challenges, and how they modulate their behaviour accordingly. In particular, we focus on how these factors affect virulence in two gram-negative model organisms; the opportunistic human pathogen, Pseudomonas aeruginosa, and the economically-important plant pathogen, Erwinia (now renamed Pectobacterium) atrosepticum. A special area of interest is in defining how changes in lifestyle (planktonic versus biofilm) influence cell-cell signaling and virulence factor production. Our work combines state-of-the-art proteomic, transcriptomic and metabolomic analyses with conventional molecular microbiological and biochemical approaches.
We work on clinical and environmental samples, as well as type (genome sequence) strains and collaborate closely with groups in the Chemistry Department to design and test novel low molecular weight blockers of specific biochemical and signaling pathways.
Current projects include regulation of type III secretion in biofilms; structure-function analysis of the Pseudomonas quinolone signal (PQS); function and regulation of genes associated with the “core” biofilm transcriptome in P. aeruginosa; the role of ppGpp in controlling virulence factor production; the structure, function and regulation of a novel biofilm-specific metzincin protease.
More recently, we have also developed an interest in using next-generation DNA sequencing platforms to analyse the “global” genomic changes associated with chronic bacterial infections.
Lab members: Steve Bowden, Jade Chung, Sanaya Patell, Ian Passmore, Peter Davenport, James Hodgkinson
1 Mikkelsen H, Duck Z, Lilley, KS. and Welch, M. “The Inter-relationship between colonies, biofilms and planktonic cells of Pseudomonas aeruginosa”. J. Bacteriol. 189:2411-2416 (2007).
2 Wang J-H, Gardiol. N., Burr, T., Salmond GPC, and Welch M “RelA-dependent (p)ppGpp production controls exoenzyme synthesis in Erwinia carotovora subsp. atroseptica.” J. Bacteriol. (2007) 189: 7643-7652.
3 Mikkelsen H, Bond N, Skindersoe ME, Givskov M, Lilley KS and Welch M. “Biofilms and Type III secretion are not mutually exclusive in Pseudomonas aeruginosa”. 155: 687-698. Microbiology (2008).
4 James Hodgkinson, Steven D. Bowden, Warren R. J. D. Galloway, David R. Spring and Martin Welch. Structure-activity analysis of the Pseudomonas quinolone signal molecule. (2010). J. Bacteriol. 192 :3833-3837.
5 Hannah G. Stickland, Peter W. Davenport, Kathryn S. Lilley, Julian L. Griffin and Martin Welch. Mutation of nfxB causes global changes in the physiology and metabolism of Pseudomonas aeruginosa. (2010). J. Proteome. Res. 9 :2957-2967.